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Requirements
The pipeline and viewer in splicingViewer are written in java programming language and need
JRE version 1.6 or higher
.
Releases
version 1.1.0
Pipeline:
AlternativeSplicing.jar
Viewer:
windows:
Download
(recommended)
Linux 32:
Download
Linux 64:
Download
Mac OS X:
Download
Source code
If you are interested in the open source codes of SplicingViewer, please contact Jinyu Wu (
iamwujy@yahoo.com.cn
) and Qi Liu (
liuqi_1984@yahoo.com.cn
).
Test data
Data set 1: An androgen-dependent prostate cancer (LNCaP) RNA-Seq samples.
Reference genome sequence
Reference genome index
Reference genome dictionary
Fastq short reads
Indexed genome mapping bam file
Genome mapping bam index file
Indexed junctions mapping bam file
Junctions mapping bam index file
RefGene annotation file
AS result annotation file
Data set 2: An androgen-independent prostate cancer (LNCaP-AI) RNA-Seq samples.
Reference genome sequence
Reference genome index
Reference genome dictionary
Fastq short reads
Indexed genome mapping bam file
Genome mapping bam index file
Indexed junctions mapping bam file
Junctions mapping bam index file
RefGene annotation file
AS result annotation file
Copyright©2010, Institute of Genomic Medicine/Zhejiang Provincial Key Laboratory of Medical Genetics,
Wenzhou Medical College, Wenzhou 325035, China.