Sequences upload |
Reference genome selection
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Reference Genome: |
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ncRNA annotation and profiling |
Parameters for SOAP to align reference genome: |
M value: |
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Match mode: 0=exact; 1=1 mismatch; 2=2 mismatch; 3=all; 4=the best |
R value: |
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How to report repeat hits: 0=none; 1=random one; 2=all |
V value: |
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Maximum number of mismatches |
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Parameters for MEGABLAST to align miRBase and Rfam: |
E value: |
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Expect value |
B value: |
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Number of database sequence to show alignments for (B) |
V value: |
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Number of database sequences to show one-line descriptions for (V) |
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Differential expression analysis
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Parameters for detecting differentially expressed miRNAs: |
P value: |
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P value inferred based on Bayesian method |
D value: |
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Fold change in normalized sequence counts |
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